@article {2019|2108,
	title = {Interaction mechanism between the focused ultrasound and lipid membrane at the molecular level},
	journal = {The Journal of chemical physics},
	volume = {150},
	year = {2019},
	pages = {215101},
	author = {Man, Viet Hoang and Li, Mai Suan and Wang, Junmei and Philippe Derreumaux and Phuong Hoang Nguyen}
}
@article {2019|2107,
	title = {Nonequilibrium atomistic molecular dynamics simulation of tubular nanomotor propelled by bubble propulsion},
	journal = {The Journal of chemical physics},
	volume = {151},
	year = {2019},
	pages = {024103},
	author = {Man, Viet Hoang and Li, Mai Suan and Wang, Junmei and Philippe Derreumaux and Phuong Hoang Nguyen}
}
@article {2018|2111,
	title = {Molecular mechanism of the cell membrane pore formation induced by bubble stable cavitation},
	journal = {The Journal of Physical Chemistry B},
	volume = {123},
	year = {2018},
	pages = {71{\textendash}78},
	author = {Man, Viet Hoang and Truong, Phan Minh and Li, Mai Suan and Wang, Junmei and Van-Oanh, Nguyen-Thi and Philippe Derreumaux and Phuong Hoang Nguyen}
}
@article {2018|2114,
	title = {Rayleigh-Plesset equation of the bubble stable cavitation in water: A nonequilibrium all-atom molecular dynamics simulation study},
	journal = {The Journal of Chemical Physics},
	volume = {148},
	year = {2018},
	pages = {094505},
	author = {Man, Viet Hoang and Li, Mai Suan and Philippe Derreumaux and Phuong Hoang Nguyen}
}
@article {2016|2115,
	title = {Aβ41 Aggregates More Like Aβ40 than Like Aβ42: In Silico and in Vitro Study},
	journal = {The Journal of Physical Chemistry B},
	volume = {120},
	year = {2016},
	pages = {7371{\textendash}7379},
	author = {Nguyen, Hoang Linh and Thi Minh Thu, Tran and Truong, Phan Minh and Lan, Pham Dang and Man, Viet Hoang and Phuong Hoang Nguyen and Tu, Ly Anh and Chen, Yi-Cheng and Li, Mai Suan}
}
@article {2016|1744,
	title = {Picosecond infrared laser-induced all-atom nonequilibrium molecular dynamics simulation of dissociation of viruses},
	journal = {Phys. Chem. Chem. Phys.},
	volume = {18},
	number = {17},
	year = {2016},
	month = {may},
	pages = {11951{\textendash}11958},
	abstract = {Since the discovery of the plant pathogen tobacco mosaic virus as the first viral entity in the late 1800s, viruses traditionally have been mainly thought of as pathogens for disease-resistances. However, viruses have recently been exploited as nanoplatforms with applications in biomedicine and materials science. To this aim, a large majority of current methods and tools have been developed to improve the physical stability of viral particles, which may be critical to the extreme physical or chemical conditions that viruses may encounter during purification, fabrication processes, storage and use. However, considerably fewer studies are devoted to developing efficient methods to degrade or recycle such enhanced stability biomaterials. With this in mind, we carry out all-atom nonequilibriummolecular dynamics simulation, inspired by the recently developed mid-infrared free-electron laser pulse technology, to dissociate viruses. Adopting the poliovirus as a representative example, we find that the primary step in the dissociation process is due to the strong resonance between the amide I vibrational modes of the virus and the tuned laser frequencies. This process is determined by a balance between the formation and dissociation of the protein shell, reflecting the highly plasticity of the virus. Furthermore, our method should provide a feasible approach to simulate viruses, which is otherwise too expensive for conventional equilibrium all-atom simulations of such very large systems. Our work shows a proof of concept which may open a new, efficient way to cleave or to recycle virus-based materials, provide an extremely valuable tool for elucidating mechanical aspects of viruses, and may well play an important role in future fighting against virus-related diseases.},
	issn = {1463-9076},
	doi = {10.1039/c5cp07711g},
	author = {Viet Hoang Man and Van-Oanh, Nguyen-Thi and Philippe Derreumaux and Li, Mai Suan and Roland, Christopher and Sagui, Celeste and Phuong Hoang Nguyen}
}
@article {2015|1634,
	title = {Amyloid beta Protein and Alzheimer{\textquoteright}s Disease: When Computer Simulations Complement Experimental Studies},
	journal = {Chem. Rev.},
	volume = {115},
	number = {9},
	year = {2015},
	month = {may},
	pages = {3518{\textendash}3563},
	doi = {10.1021/cr500638n},
	author = {Nasica-Labouze, Jessica and Phuong Hoang Nguyen and Fabio Sterpone and Berthoumieu, Olivia and Buchete, Nicolae-Viorel and Cote, Sebastien and De Simone, Alfonso and Doig, Andrew J. and Faller, Peter and Garcia, Angel and Laio, Alessandro and Li, Mai Suan and Melchionna, Simone and Mousseau, Normand and Mu, Yuguang and Paravastu, Anant and Pasquali, Samuela and Rosenman, David J. and Strodel, Birgit and Tarus, Bogdan and Viles, John H. and Zhang, Tong and Wang, Chunyu and Philippe Derreumaux}
}
@article {2015|1745,
	title = {Picosecond melting of peptide nanotubes using an infrared laser: a nonequilibrium simulation study},
	journal = {Phys. Chem. Chem. Phys.},
	volume = {17},
	number = {41},
	year = {2015},
	pages = {27275{\textendash}27280},
	doi = {10.1039/c5cp04401d},
	author = {Viet, Man Hoang and Phan Minh Truong and Philippe Derreumaux and Li, Mai Suan and Roland, Christopher and Sagui, Celeste and Phuong Hoang Nguyen}
}
@article {2014|1888,
	title = {Amyloid oligomer structure characterization from simulations: A general method},
	journal = {J. Chem. Phys.},
	volume = {140},
	number = {9},
	year = {2014},
	month = {mar},
	pages = {094105},
	doi = {10.1063/1.4866902},
	author = {Phuong Hoang Nguyen and Li, Mai Suan and Philippe Derreumaux}
}
@article {2014|1379,
	title = {Effect of the English Familial Disease Mutation (H6R) on the Monomers and Dimers of A beta 40 and A beta 42},
	journal = {Acs Chem. Neurosci.},
	volume = {5},
	number = {8},
	year = {2014},
	month = {aug},
	pages = {646{\textendash}657},
	author = {Man Hoang Viet and Phuong Hoang Nguyen and Philippe Derreumaux and Li, Mai Suan}
}
@article {2013,
	title = {Effect of the Tottori Familial Disease Mutation (D7N) on the Monomers and Dimers of A beta(40) and A beta(42)},
	journal = {Acs Chem. Neurosci.},
	volume = {4},
	number = {11},
	year = {2013},
	month = {nov},
	pages = {1446{\textendash}1457},
	author = {Man Hoang Viet and Phuong Hoang Nguyen and Son Tung Ngo and Li, Mai Suan and Philippe Derreumaux}
}
@article {2011|1953,
	title = {Effects of all-atom force fields on amyloid oligomerization: replica exchange molecular dynamics simulations of the A beta(16-22) dimer and trimer},
	journal = {Phys. Chem. Chem. Phys.},
	volume = {13},
	number = {20},
	year = {2011},
	pages = {9778{\textendash}9788},
	doi = {10.1039/c1cp20323a},
	author = {Phuong Hoang Nguyen and Li, Mai Suan and Philippe Derreumaux}
}
@article {2007|1535,
	title = {Monomer adds to preformed structured oligomers of A beta-peptides by a two-stage dock-lock mechanism},
	journal = {Proc. Natl. Acad. Sci. U.s.a.},
	volume = {104},
	number = {1},
	year = {2007},
	month = {jan},
	pages = {111{\textendash}116},
	author = {Phuong Hoang Nguyen and Li, Mai Suan and Stock, Gerhard and Straub, John E. and Thirumalai, D.}
}
