Publications

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Author [ Title(Desc)] Type Year
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Hallen D., Wadso I., Wasserman D.J, Robert C.H, Gill S.J.  1988.  Enthalpy of dimerization of benzene in water. J. Phys. Chem.. 92:3623–3625.
Delalande O., Sacquin-Mora S, Baaden M.  2011.  Enzyme Closure and Nucleotide Binding Structurally Lock Guanylate Kinase. Biophys. J.. 101:1440–1449.
Nguyen PH.  2009.  Estimating configurational entropy of complex molecules: A novel variable transformation approach. Chem. Phys. Lett.. 468:90–93.
Robert CH.  1995.  Estimating friction coefficients of mixed globular/chain molecules, such as protein/DNA complexes. Biophys. J.. 69:840–848.
Baaden M..  2000.  Etudes de molécules extractantes en solution et aux interfaces liquide-liquide: aspects structuraux et mécanistiques des effets de synergie.
Mazur AK.  2006.  Evaluation of elastic properties of atomistic DNA models. Biophys. J.. 91:4507–4518.
Kynast P, Derreumaux P, Strodel B.  2016.  Evaluation of the coarse-grained OPEP force field for protein-protein docking. Bmc Biophysics. 9
Gelly JC, Chiche L, Gracy J.  2005.  EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments. Bmc Bioinf.. 6
Derreumaux P.  2001.  Evidence that the 127-164 region of prion proteins has two equi-energetic conformations with beta or alpha features. Biophys. J.. 81:1657–1665.
Jaiteh M, Taly A, Hénin J.  2016.  Evolution of Pentameric Ligand-Gated Ion Channels: Pro-Loop Receptors.. Plos One. 11:e0151934.
Férey N., Gros P.-E., Hérisson J., Gherbi R..  2004.  Exploration by visualization of numerical and textual genomic data. Journal of Biological Physics and Chemistry. 4:102–110.
Férey N..  2006.  Exploration Immersive de Données Génomiques Textuelles et Factuelles : vers une approche par Visual Mining.
Derreumaux P.  2009.  Exploring amyloid aggregates with the OPEP coarse-grained force field. Abstracts of Papers of the American Chemical Society. 238
Mousseau N, Derreumaux P.  2008.  Exploring energy landscapes of protein folding and aggregation. Front. Biosci.. 13:4495–4516.
Hénin J., Fiorin G., Chipot C, Klein M.L.  2010.  Exploring Multidimensional Free Energy Landscapes Using Time-Dependent Biases on Collective Variables. J. Chem. Theory Comput.. 6:35–47.
Wei GH, Mousseau N, Derreumaux P.  2004.  Exploring the early steps of aggregation of amyloid-forming peptide KFFE. Journal of Physics-condensed Matter. 16:S5047-S5054.
Mousseau N, Derreumaux P.  2005.  Exploring the early steps of amyloid peptide aggregation by computers. Acc. Chem. Res.. 38:885–891.
Wei GH, Mousseau N, Derreumaux P.  2002.  Exploring the energy landscape of proteins: A characterization of the activation-relaxation technique. J. Chem. Phys.. 117:11379–11387.
Stock G., Jain A., Riccardi L., Nguyen P.H..  2011.  Exploring the energy landscape of small peptides and proteins by molecular dynamics simulations.
Santini S., Wei G., Mousseau N., Derreumaux P..  2003.  Exploring the folding pathways of proteins through energy landscape sampling: Application to Alzheimer's beta-amyloid peptide. Internet Electron. J. Mol. Des.. 2:564–577.
Chipot C, Hénin J.  2005.  Exploring the free energy landscape of a short peptide using an average force. J. Chem. Phys.. 123:244906.
Gan H.H, Pasquali S., Schlick andT.  2003.  Exploring The Repertoire of RNA Secondary Motifs Using Graph Theory with Implications for RNA Design. Nuc. Acids Res.. 31:2926–2943.
Campbell JD, Biggin PC, Baaden M, Sansom MSP.  2003.  Extending the structure of an ABC transporter to atomic resolution: Modeling and simulation studies of MsbA. Biochemistry. 42:3666–3673.

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