Publications

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[ Author(Desc)] Title Type Year
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F
Floquet N, Pasco S, Ramont L, Derreumaux P, Laronze JY, Nuzillard JM, Maquart FX, Alix AJP, Monboisse JC.  2004.  The antitumor properties of the alpha 3(IV)-(185-203) peptide from the NC1 domain of type IV collagen (tumstatin) are conformation-dependent. J. Biol. Chem.. 279:2091–2100.
Floquet N, Hery-Huynh S, Dauchez M, Derreumaux P, Tamburro AM, Alix AJP.  2004.  Structural characterization of VGVAPG, an elastin-derived peptide. Biopolymers. 76:266–280.
Fogarty AC, Duboue-Dijon E, Sterpone F, Hynes JT, Laage D.  2013.  Biomolecular hydration dynamics: a jump model perspective. Chem. Soc. Rev.. 42:5672–5683.
Forcellino F, Derreumaux P.  2001.  Computer simulations aimed at structure prediction of supersecondary motifs in proteins. Proteins-structure Function and Genetics. 45:159–166.
Francia F., Malferrari M., Sacquin-Mora S, Venturoli G..  2009.  Charge Recombination Kinetics and Protein Dynamics in Wild Type and Carotenoid-less Bacterial Reaction Centers: Studies in Trehalose Glasses. J. Phys. Chem. B. 113:10389–1398.
Fu Z, Luo Y, Derreumaux P, Wei G.  2009.  Induced beta-Barrel Formation of the Alzheimer’s A beta 25-35 Oligomers on Carbon Nanotube Surfaces: Implication for Amyloid Fibril Inhibition. Biophys. J.. 97:1795–1803.
Fu H, Cai W, Hénin J, Roux B, Chipot C.  2017.  New Coarse Variables for the Accurate Determination of Standard Binding Free Energies. J Chem Theory Comput. 13(11):5173-5178.
Fu Z, Luo Y, Derreumaux P, Wei G.  2009.  Induced beta-barrel formation of the Alzheimer's Abeta25-35 oligomers on carbon nanotube surfaces: implication for amyloid fibril inhibition.. Biophys. J.. 97:1795–1803.
G
Gabb HA, Lavery R, Prévost C.  1995.  Efficient conformational space sampling for nucleosides using internal coordinate Monte-Carlo simulations and a modified furanose description. J. Comput. Chem.. 16:667–680.
Gabb HA, Sanghani SR, Robert CH, Prévost C.  1996.  Finding and visualizing nucleic acid base stacking. J Mol Graph. 14:6–11.
Gabb H., Prévost C, Bertucat G., Robert CH, Lavery R.  1997.  Collective-variable Monte Carlo simulation of DNA. J. Comp. Chem.. 18:2001–2011.
Gan H.H, Pasquali S., Schlick andT.  2003.  Exploring The Repertoire of RNA Secondary Motifs Using Graph Theory with Implications for RNA Design. Nuc. Acids Res.. 31:2926–2943.
Gan H.H, Perow R.A, Roy S., , Yan S., Nicoletta A., D. Vafai SJ, Wang L., Noah J.E, Pasquali S. et al..  2002.  Analysis of Protein Sequence/Structure Similarity Relationships. Biophys. J.. 83:2781–2791.
Garnier C, Briki F, Nedelec B, Le Pogamp P, Dogan A, Rioux-Leclercq N, Goude R, Beugnet C, Martin L, Delpech M et al..  2017.  VLITL is a major cross-β-sheet signal for fibrinogen Aα-chain frameshift variants.. Blood. 130(25):2799-2807.
Garret M., Boue-Grabot E., Taly A.  2014.  Long distance effect on ligand-gated ion channels extracellular domain may affect interactions with the intracellular machinery. Commun. Integr. Biol.. 7:e27984.
Gelly JC, Chiche L, Gracy J.  2005.  EvDTree: structure-dependent substitution profiles based on decision tree classification of 3D environments. Bmc Bioinf.. 6
Gelly J.-C, Etchebest C., Hazout S., de Brevern A.G.  2006.  Protein Peeling 2: a web server to convert protein structures into series of protein units. Nucleic Acids Res.. 34:W75-W78.
Gelly JC, de Brevern AG, Hazout S.  2006.  `Protein Peeling': an approach for splitting a 3D protein structure into compact fragments. Bioinformatics. 22:129–133.
Gelly JC, Gracy J, Kaas Q, Le-Nguyen D, Heitz A, Chiche L.  2004.  The KNOTTIN website and database: a new information system dedicated to the knottin scaffold. Nucleic Acids Res.. 32:D156-D159.
Georgel PT, Robert CH.  2002.  Differential core histone binding behavior: RNA polymerase I promoter region vs 5S rDNA positioning DNA sequences. Cell Biochem. Biophys.. 37:1–13.
Gerencser L, Taly A, Baciou L, Maroti P, Sebban P.  2002.  Cd2+ binding effect on bacterial reaction center mutants: The proton penetration involves interdependent pathways. BIOPHYSICAL JOURNAL. 82:518A-518A.
Gerencser L., Taly A, Baciou L., Maroti P., Sebban P..  2002.  Effect of binding of Cd2+ on bacterial reaction center mutants: proton-transfer uses interdependent pathways. Biochemistry. 41:9132–9138.
Gill SJ, Di Cera E, Doyle ML, Bishop GA, Robert CH.  1987.  Oxygen binding constants for human hemoglobin tetramers. Biochemistry. 26:3995–4002.
Gill SJ, Robert CH, Coletta M, Di Cera E, Brunori M.  1986.  Cooperative free energies for nested allosteric models as applied to human hemoglobin. Biophys. J.. 50:747–752.
Gill S.J, Robert C.H, Wyman J..  1988.  Analysis of allosteric systems. Biochemical Thermodynamics.

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