Publications

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Book Chapter
Tek A., Laurent B., Piuzzi M., Lu Z., Baaden M, Delalande O., Chavent M, Férey N., Martin C., Piccinali L. et al..  2012.  Advances in Human-Protein Interaction - Interactive And Immersive Molecular Simulations.
Baaden M, Barboiu M, Borthakur MPratim, Chen C-L, Coalson R, Davis J, Freger V, Gong B, Hélix-Nielsen C, Hickey R et al..  2018.  Applications to water transport systems: general discussion.. Faraday Discuss. 209:389-414.
Baaden M, Barboiu M, Bill RM, Chen C-L, Davis J, Di Vincenzo M, Freger V, Fröba M, Gale PA, Gong B et al..  2018.  Biomimetic water channels: general discussion.. Faraday Discuss. 209:205-229.
Smith JC, Cournia Z, Taly A, Tournier AL, Mihailescu D, G Ullmann M.  2004.  Conformational transitions in proteins and membranes. Novel Approaches to the Structure and Dynamics of Liquids: Experiments, Theories and Simulations. :485–502.
Smith JC, Cournia Z, Taly A, Tournier AL, Mihailescu D, G Ullmann M.  2004.  Conformational transitions in proteins and membranes. Novel Approaches to the Structure and Dynamics of Liquids: Experiments, Theories and Simulations. :485–502.
Hénin J, Baaden M, Taly A.  2014.  Foundations of Biomolecular Simulations: A Critical Introduction to Homology Modeling, Molecular Dynamics Simulations, and Free Energy Calculations of Membrane Proteins. Membrane Proteins Production for Structural Analysis. :347–392.
Baaden M, Berny F., Muzet N., Troxler L., Wipff G..  2000.  Interfacial features of assisted liquid-liquid extraction of uranyl and cesium salts: a molecular dynamics investigation. ACS Symposium Series 757. :71–85.
Timsit Y, Allemand F, C C, Springer M.  2008.  Order-disorder transitions in ribosome assembly. Ribosomal proteins,.
Timr S., Madern D., Sterpone F..  2020.  Protein thermal stability. Computational Approaches for Understanding Dynamical Systems: Protein Folding and Assembly.
Cole RB, Prévost C, Tabet JC.  1989.  Stereospecific Ion-Molecule reactions in the collision cell induced by nucleophilic gas phase reagents on CI/NH4+ protonated diastereoisomeric tetracyclic terpenes.. Advances in Mass Spectrometry. 11:1056.
Baaden M, Barboiu M, Bill RM, Casanova S, Chen C-L, Conner M, Freger V, Gong B, Góra A, Hinds B et al..  2018.  Structure and function of natural proteins for water transport: general discussion.. Faraday Discuss. 209:83-95.
Conference Paper
Tran T-T, Nguyen PH, Derreumaux P.  2016.  Alzheimer’s Disease: Insights into Amyloid Fibril Formation from Lattice Monte Carlo Simulations. Biophys. J.. 110:219A.
Krieger E., Leger L., Durrieu M.P., Taib N., Bond P., Laguerre M., Lavery R., Sansom M.S.P., Baaden M.  2007.  Atomistic modeling of the membrane-embedded synaptic fusion complex: a grand challenge project on the DEISA HPC infrastructure. ParCo 2007, Parallel Computing: Architectures, Algorithms and Applications. 38:729–736.
Taly A.  2018.  Is the boundary of fun redefined in a mixed-reality serious game?
Gerencser L, Taly A, Baciou L, Maroti P, Sebban P.  2002.  Cd2+ binding effect on bacterial reaction center mutants: The proton penetration involves interdependent pathways. BIOPHYSICAL JOURNAL. 82:518A-518A.
Trellet M., Férey N., Baaden M, Bourdot P..  2015.  Content and task based navigation for structural biology in 3D environments. Virtual and Augmented Reality for Molecular Science (VARMS@IEEEVR), 2015 IEEE 1st International Workshop on. :31–36.
Trellet M., Férey N., Baaden M, Bourdot P..  2014.  Content-guided Navigation in Multimeric Molecular Complexes. {BIOIMAGING} 2014 - Proceedings of the International Conference on Bioimaging, ESEO, Angers, Loire Valley, France, 3-6 March, 2014. :76–81.
Férey N., Delalande O., Grasseau G., Baaden M.  2008.  From Interactive to Immersive Molecular Dynamics. Workshop on Virtual Reality Interaction and Physical Simulation (VRIPHYS 08 - Eurographics). :89–96.
Chavent M, Piuzzi M, Tek A, Baaden M.  2011.  FvNano: A Virtual Laboratory to Manipulate Molecular Systems. 1st IEEE symposium on biological data visualization, Providence, RI @ ieee visweek, 2011, N# 136.
Tek A, Laurent B, Férey N, Baaden M.  2010.  Interacting with Molecular Simulations using a Multimodal VR Framework. EuroVR-EVE. :1–4.
Trellet M., Férey N., Baaden M, Bourdot P..  2016.  Interactive visual analytics of molecular data in immersive environments via a semantic definition of the content and the context. 2016 Workshop on Immersive Analytics (IA).
Trellet M., Férey N., Baaden M, Bourdot P..  2013.  Navigation guidée par le contenu pour l'exploration moléculaire.. Actes de l'AFRV.
Lemoine D, Habermacher C, Martz A, Méry P-F\ccois, Bouquier N, Diverchy F, Taly A, Rassendren F\ccois, Specht A, Grutter T.  2014.  Optogating a powerful approach to control an ion-channel gate. PURINERGIC SIGNALLING. 10:762–762.
Chavent M, Vanel A., Lévy B., Raffin B., Tek A., Baaden M.  2010.  A Rendering Method for Small Molecules up to Macromolecular Systems: HyperBalls Accelerated by Graphics Processors. JOBIM.
Ferey N, Toffano-Nioche C, Matte-Taillez O, Gherbi R, Turner W.  2007.  REVIVOS: REalité VIrtuelle pour la construction de VOcabulaires Spécialisés. Journées Francophones d'Ingénierie des Connaissances (AFIA-IC 2007).

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