Visualizing protein structures - tools and trends.

TitleVisualizing protein structures - tools and trends.
Publication TypeJournal Article
Year of Publication2020
AuthorsMartinez X, Chavent M, Baaden M
JournalBiochem Soc Trans
Date Published2020 Mar 20
ISSN1470-8752
Abstract

Molecular visualization is fundamental in the current scientific literature, textbooks and dissemination materials. It provides an essential support for presenting results, reasoning on and formulating hypotheses related to molecular structure. Tools for visual exploration of structural data have become easily accessible on a broad variety of platforms thanks to advanced software tools that render a great service to the scientific community. These tools are often developed across disciplines bridging computer science, biology and chemistry. This mini-review was written as a short and compact overview for scientists who need to visualize protein structures and want to make an informed decision which tool they should use. Here, we first describe a few 'Swiss Army knives' geared towards protein visualization for everyday use with an existing large user base, then focus on more specialized tools for peculiar needs that are not yet as broadly known. Our selection is by no means exhaustive, but reflects a diverse snapshot of scenarios that we consider informative for the reader. We end with an account of future trends and perspectives.

DOI10.1042/BST20190621
Alternate JournalBiochem. Soc. Trans.
Citation Key2020|2074
PubMed ID32196545