Publications
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2008. The electrostatic origin of low-hydration polymorphism in DNA. Chemphyschem in Press. 9:2691–2694.
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2001. Molecular dynamics studies of sequence-directed curvature in bending locus of Trypanosome kinetoplast DNA. J. Biomol. Struct. Dyn.. 18:832–843.
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2001. Internal coordinate simulation method. Computational Biochemistry and Biophysics. :115–131.
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2008. Statistics of time-limited ensembles of bent DNA conformations. J. Phys. Chem. B. 112:4975–4982.
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2016. Homologous Pairing between Long DNA Double Helices. Phys. Rev. Lett.. 116:158101.
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2007. Wormlike chain theory and bending of short DNA. Phys. Rev. Lett.. 98:218102.
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1994. The catalytic mechanism of {$\alpha$}-amylases based upon enzyme crystal structures and model building calculations. Biochem. Biophys. Res. Commun.. 204:297–302.
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1997. Quasi-Hamiltonian equations of motion for internal coordinate molecular dynamics of polymers. J. Comput. Chem.. 18:1354–1364.
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1991. Derivation and testing of explicit equations of motion for polymers described by internal coordinates. J. Comput. Phys.. 92:261–272.
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1983. Kinetics of glucose accumulation during depolimerization of polysaccharides by enzymes with different mechanisms of action. Mol. Biol.. 17:101–111.
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2003. Titration \em in silico of reversible B$łeftrightarrow$A transitions in DNA. J. Am. Chem. Soc.. 125:7849–7859.
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2017. Weak nanoscale chaos and anomalous relaxation in DNA. Phys. Rev. E. 95:062417.
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1984. Most probable distribution at enzyme depolymerization of polysaccharides. Biopolymers. 23:859–876.
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1991. A probabilistic view on steady state enzyme kinetics. J. Theor. Biol.. 148:229–242.
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1998. Hierarchy of fast motions in protein dynamics. J. Phys. Chem. B. 102:473–479.
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2011. Local elasticity of strained DNA studied by all-atom simulations. Phys. Rev. E. 84:021903.
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2009. Analysis of accordion DNA stretching revealed by the gold cluster ruler. Phys. Rev. E. 80:010901.
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1993. Multiple attack in the porcine pancreatic alpha-amylase hydrolysis of amylose and amylopectine. Arch. Biochem. Biophys.. 306:29–38.
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2009. Modeling DNA dynamics under steady deforming forces and torques. J. Chem. Theory Comput.. 5:2149–2157.
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1989. New methodology for computer-aided modelling of biomolecular structure and dynamics: 1. Non-cyclic structures. J. Biomol. Struct. Dyn.. 6:815–832.
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1985. On the possible mechanism of multiple enzyme attack in polysaccharide degradation. Mol. Biol.. 19:1400–1408.
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2002. DNA dynamics in a water drop without counterions. J. Am. Chem. Soc.. 124:14707–14715.
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1984. Mathematical models of depolymerization of amylose by alpha-amylases. Biopolymers. 23:1735–1756.
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1992. Schematic methods for probabilistic enzyme kinetics. J. Theor. Biol.. 155:387–407.
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1999. Internal correlations in minor groove profiles of experimental and computed B-DNA conformations. J. Mol. Biol.. 290:373–377.