Publications

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Mazur AK.  2013.  On the origin of thermal untwisting of DNA. J. Phys. Chem. B. 117:1857–1861.
Mazur AK.  2007.  Wormlike chain theory and bending of short DNA. Phys. Rev. Lett.. 98:218102.
Mazur AK.  2011.  Local elasticity of strained DNA studied by all-atom simulations. Phys. Rev. E. 84:021903.
Mazur AK.  2001.  Molecular dynamics studies of sequence-directed curvature in bending locus of Trypanosome kinetoplast DNA. J. Biomol. Struct. Dyn.. 18:832–843.
Mazur AK.  2001.  Internal coordinate simulation method. Computational Biochemistry and Biophysics. :115–131.
Mazur AK.  2008.  Statistics of time-limited ensembles of bent DNA conformations. J. Phys. Chem. B. 112:4975–4982.
Mazur AK.  1990.  Toward a theory of quasi-steady-state enzymatic processes. Mol. Biol.. 24:202–208.
Mazur AK, Sumpter BG, Noid DW.  2001.  Internal coordinate phase space analysis of macromolecular systems. Comput. Theor. Polym. Sci.. 11:35–47.
Mazur AK, Nakatani H..  1993.  Multiple attack in the porcine pancreatic alpha-amylase hydrolysis of amylose and amylopectine. Arch. Biochem. Biophys.. 306:29–38.
Mazur AK.  1997.  Quasi-Hamiltonian equations of motion for internal coordinate molecular dynamics of polymers. J. Comput. Chem.. 18:1354–1364.
Mazur AK, Dorofeyev VE, Abagyan RA.  1991.  Derivation and testing of explicit equations of motion for polymers described by internal coordinates. J. Comput. Phys.. 92:261–272.
Mazur AK.  2009.  Analysis of accordion DNA stretching revealed by the gold cluster ruler. Phys. Rev. E. 80:010901.
Mazur AK.  2012.  Torque transfer coefficient in DNA under torsional stress. Phys. Rev. E. 86:011914.
Mazur AK.  2003.  Titration \em in silico of reversible B$łeftrightarrow$A transitions in DNA. J. Am. Chem. Soc.. 125:7849–7859.
Mazur AK.  1984.  Most probable distribution at enzyme depolymerization of polysaccharides. Biopolymers. 23:859–876.
Mazur AK.  1998.  Hierarchy of fast motions in protein dynamics. J. Phys. Chem. B. 102:473–479.
Mazur AK.  1990.  A new method for analysing of kinetic graphs in enzymatic catalysis. Mol. Biol.. 24:209–213.
Mazur AK.  2008.  The electrostatic origin of low-hydration polymorphism in DNA. Chemphyschem in Press. 9:2691–2694.
Mazur AK.  2013.  Comment on ``Length Scale Dependence of DNA Mechanical Properties''. Phys. Rev. Lett.. 111
Mazur AK.  2009.  Modeling DNA dynamics under steady deforming forces and torques. J. Chem. Theory Comput.. 5:2149–2157.
Mazur AK, Abagyan RA.  1989.  New methodology for computer-aided modelling of biomolecular structure and dynamics: 1. Non-cyclic structures. J. Biomol. Struct. Dyn.. 6:815–832.
Mazur AK, Kamashev DE.  2002.  Comparative bending dynamics in DNA with and without regularly repeated adenine tracts. Phys. Rev. E. 66:011917.

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